PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_05D2F0613.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 168aa    MW: 18704.5 Da    PI: 12.0386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_05D2F0613.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247e-0893128545
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 
                            ++  E+rRR+r N+++  L++l+P++      K +Ka++L 
  Traes_4BS_05D2F0613.2  93 NKLSEKRRRSRTNEKMKALQSLIPNS-----NKTDKASMLD 128
                            5678*********************7.....5888888885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.18588137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-691129No hitNo description
SuperFamilySSF474593.01E-992129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-593127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-494143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-894129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRAAIPPHWV VDERGARQAA APGGRLRGAR GRRRRRFLRE RSGRVVREPE PEPLAAGDRP  60
RGGSGSKRTR AARGGRPPAR GIQQQANPCL RVNKLSEKRR RSRTNEKMKA LQSLIPNSNK  120
TDKASMLDEH KRSAGDFFDV HEFAVLLVCC AASARLVPIY NLEEPVAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747876e-40AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752502.11e-20PREDICTED: transcription factor SPATULA
RefseqXP_003561052.21e-20PREDICTED: transcription factor SPATULA
TrEMBLW5E8V81e-118W5E8V8_WHEAT; Uncharacterized protein
STRINGBRADI1G48400.14e-20(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-16bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]