PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_5D316DD23.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 566aa    MW: 61112.1 Da    PI: 8.5742
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_5D316DD23.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-14396445355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Traes_4BL_5D316DD23.1 396 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 445
                            9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.00E-13254361No hitNo description
Gene3DG3DSA:3.30.730.105.0E-14255277IPR001471AP2/ERF domain
SMARTSM003806.3E-23255365IPR001471AP2/ERF domain
PROSITE profilePS5103216.476255359IPR001471AP2/ERF domain
PfamPF008471.9E-4319351IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-9323361IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-14323360IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17394455IPR016177DNA-binding domain
CDDcd000187.78E-23394455No hitNo description
Gene3DG3DSA:3.30.730.104.6E-18395453IPR001471AP2/ERF domain
SMARTSM003802.1E-33395459IPR001471AP2/ERF domain
PROSITE profilePS5103219.111395453IPR001471AP2/ERF domain
PfamPF008471.5E-9396445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDMNSGWLGF SLSSSSYAAR GYDAGEGVGC DGGDGGSCSS PTAVAASSSP IVGVPLHSGG  60
GSGQYDGRDW RHQHAEAKGP KLEDFLSVGY GNDRSSGIYD ASHADELKYH HHQDVHHAYP  120
GSPYFQGNGG GGAVIGLDIN NAPPPPHCTG LPDHHYMPAH HGQYSLCPPN QQAAGTGAMA  180
AAPMYSSAAG FDGSTNMSIS GIKSWLRQSM YVPERSPAVP PSVHSAPTEP PPPLPAPCVP  240
VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQGE LLLIRSRTTK  300
HFCLCNFVLT STSMHVRSRI CRMQRAVYLG GYDKEEKAAR AYDLAALKYW GPTTHINFPL  360
STYEKELEEM KHMTRQEFIA HLRRNSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD  420
LYLGTFSTQE EAAEAYDIAA IKFRGLSAVT NFDISKYDVK RICASSHLIG GDLACRRSPT  480
RDAPALPSGV SVAVERPEAG ASDNSSDASD GHRGAHLLHG LQYAHAMKYE AGEGSNGGGN  540
WMPGAARPVA GVPAAHPLPV FALWND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557671e-156BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186422.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
TrEMBLA0A3B6IV990.0A0A3B6IV99_WHEAT; Uncharacterized protein
TrEMBLA0A446SE820.0A0A446SE82_TRITD; Uncharacterized protein
STRINGTraes_4BL_5D316DD23.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-108AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]