PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_57E9A2C6B.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 211aa    MW: 22689.6 Da    PI: 6.8735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_57E9A2C6B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08177199729
                            HHHHHHHHHHHHHHHHHHCTSCC CS
                    HLH   7 erErrRRdriNsafeeLrellPk 29 
                            ++ErrRR+r+N++++ Lr+++Pk
  Traes_4BL_57E9A2C6B.2 177 MAERRRRKRLNDRLSMLRSIVPK 199
                            89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.902170211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-7172202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-6176199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-6177200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGGMDQLDEQ SFLDELMSLR REEAPWLAYT GSGMMTTSDL LFYGGEGAGE ASSGTDLAGP  60
FLQQPMAPPH RSHEEFNFDY LSEVCNPYRS CVGVVPRHGV AHGAGQALVQ YPLHDAMAED  120
DPSGSNLHRG GGSSSSPVPF VFGAGGAGES PEMIRGVFTG AHARSKLNGG TTSKNLMAER  180
RRRKRLNDRL SMLRSIVPKI SKVCLCLASR N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150227.11e-115transcription factor bHLH61-like isoform X1
RefseqXP_020150229.11e-115transcription factor bHLH61-like isoform X2
TrEMBLA0A446SGZ91e-151A0A446SGZ9_TRITD; Uncharacterized protein
STRINGTraes_4BL_57E9A2C6B.21e-155(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.21e-08beta HLH protein 93
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]