PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_37108D17C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 66aa    MW: 7731.09 Da    PI: 8.5099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_37108D17C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-092411355
                           HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH..HHHHHHH CS
                    HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAv..eYIksLq 55
                           R+riN+++  L++l+P++      K +Ka++L +A+  eY+k+Lq
  Traes_4BL_37108D17C.1  2 RSRINEKMKALQSLIPNS-----NKTDKASMLDEAIliEYLKQLQ 41
                           99***************7.....5***********555******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.017138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-9245No hitNo description
SMARTSM003530.0049246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-11249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
WRSRINEKMK ALQSLIPNSN KTDKASMLDE AILIEYLKQL QLQVQVSKCM SQWLVDVETN  60
LLVHLF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353603e-33BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBankAK3747873e-33AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
GenBankKJ7268603e-33KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531246.14e-19PREDICTED: transcription factor SPATULA-like isoform X2
RefseqXP_010531245.14e-19PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_014752502.14e-19PREDICTED: transcription factor SPATULA
RefseqXP_003561052.24e-19PREDICTED: transcription factor SPATULA
RefseqXP_013736151.14e-19PREDICTED: transcription factor SPATULA-like isoform X3
RefseqXP_013736081.14e-19PREDICTED: transcription factor SPATULA-like isoform X2
RefseqXP_013736003.14e-19PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_013583361.15e-19PREDICTED: transcription factor SPATULA isoform X2
RefseqXP_013583356.15e-19PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_013686106.15e-19PREDICTED: transcription factor SPATULA-like isoform X2
RefseqXP_013628223.15e-19PREDICTED: transcription factor SPATULA-like isoform X2
RefseqXP_013686105.15e-19PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_013628222.15e-19PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_013723019.15e-19PREDICTED: transcription factor SPATULA-like isoform X2
RefseqXP_013723018.15e-19PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_009138272.15e-19PREDICTED: transcription factor SPATULA
RefseqXP_010437251.15e-19PREDICTED: transcription factor SPATULA-like
RefseqXP_006411917.15e-19hypothetical protein EUTSA_v10025554mg
RefseqXP_013656610.15e-19PREDICTED: transcription factor SPATULA-like
RefseqXP_013655018.15e-19PREDICTED: transcription factor SPATULA-like
SwissprotQ9FUA41e-20SPT_ARATH; Transcription factor SPATULA
TrEMBLW5E2K32e-41W5E2K3_WHEAT; Uncharacterized protein
STRINGGSMUA_Achr10P09040_0015e-20(Musa acuminata)
STRINGGSMUA_Achr9P11300_0012e-21(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]