PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_2F534B325.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 194aa    MW: 21106.5 Da    PI: 8.4822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_2F534B325.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11112159355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  Traes_4BL_2F534B325.1 112 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIDYVKQLE 159
                            5799************************.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.348109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9112159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-15113174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-16113171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-10114163No hitNo description
SMARTSM003531.1E-10115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDQQFVEPPL LGHQEQYYTS PMATPSFHPS RSSDFPSFGG SSSLPNLPFG SATVKNELGQ  60
PSPPPSSNFL SFGAGQAGTL NFSGGAWQHD GVEGTMQLQA PERRSRAPAN AQEHVIAERK  120
RREKLQQQFV SLATIVPGLK KTDKISLLGS TIDYVKQLED KVKALEEQGS RRSSESTTVF  180
ESKCRISAAD PNGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122ERKRRE
2118123RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2315121e-41AC231512.1 Oryza minuta clone OM__Ba0045O21, complete sequence.
GenBankCP0126111e-41CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC0997321e-41AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAP0149591e-41AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK2881571e-41AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752081.11e-91PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLW5E2D31e-142W5E2D3_WHEAT; Uncharacterized protein
STRINGMLOC_56065.21e-127(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-22bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]