PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_D95D10893.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 597aa    MW: 65550 Da    PI: 7.0342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_D95D10893.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12443489455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Traes_4AS_D95D10893.1 443 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 489
                            799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-5054243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.101439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.67E-14442493No hitNo description
PfamPF000102.1E-9443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17443501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-18443505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MKTEIEEEGT RGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASA LVGLQNKLQD  60
LVEADGKSLR WNYAIFWQLS HTKSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ  120
QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPCHVG GPGQVFATGA  180
PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR  240
SVFLGASSKK AASEKHDENS SAQISPGLAK IFGKDLNLSR PLVNTGAVPL KMNERSWDMQ  300
KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKNETSQRS NGAAHSPGLS  360
PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AALLGGENGS VDGLCKEQVA  420
PAMEGQPRKR GRKPANGRVE ALNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  480
AITHITDLQK KLKEMESERD MFLESGMVDR RVQTPRPEVD IQVVQDEVLV RVMSPMDNYP  540
INNVFQAFEE AEVKVGESKI TSNNGKVMHS FVIKSPGSEQ QTREKLIAAM SRAMNSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-23542439192Transcription factor MYC3
4rqw_B1e-23542439192Transcription factor MYC3
4rs9_A1e-23542439192Transcription factor MYC3
4yz6_A1e-23542439192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3543650.0AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15.
GenBankAK2522400.0AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960675.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLW5E0420.0W5E042_WHEAT; Uncharacterized protein
STRINGMLOC_33189.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-130bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]