PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_A7507A8AF.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 244aa    MW: 27418.2 Da    PI: 8.7735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_A7507A8AF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-16143233199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f k +++s+v +  +l lp +f++++  k  ++ t+tl de+ +++e k+    ++++  l++GW +F+ ++ +++gD+ vF+l++ +
  Traes_4AS_A7507A8AF.2 143 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPT 224
                            8999********************99533..4459***************..555555..9***********************9867 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v+++r+
  Traes_4AS_A7507A8AF.2 225 TF--KVHIIRA 233
                            77..9999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-19134233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-22136232IPR015300DNA-binding pseudobarrel domain
CDDcd100175.34E-25141232No hitNo description
PROSITE profilePS5086311.321143234IPR003340B3 DNA binding domain
SMARTSM010193.7E-16143234IPR003340B3 DNA binding domain
PfamPF023625.7E-15143233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT YAPKTPSPMK HKRRRVIEAA  60
TPVPSPPRRS RRLAHLPEVK YADACAEVGE DSERVGRWSP RRRSGSIYLA GGGGGPISMK  120
ARMEAASKAE ELESQLDPQF PSFMKRMLHS HVVRGFWLGL PSHFCDTYLP KNDCTITLVD  180
EKDEEFESKY LAYKKGLSGG WAGFALDHVI RDGDSTVFQL IKPTTFKVHI IRAAVGDDDN  240
EEME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498040.0AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149937.11e-176B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-122Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A3B6HLX10.0A0A3B6HLX1_WHEAT; Uncharacterized protein
STRINGTraes_4AS_A7507A8AF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]