PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_231DDE5DB.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 403aa    MW: 43422 Da    PI: 7.7714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_231DDE5DB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.8e-15254313155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Traes_4AS_231DDE5DB.2 254 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 313
                            789******************544454478446*************************98 PP

2AP242.22e-13358402350
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                            y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+
  Traes_4AS_231DDE5DB.2 358 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAA 402
                            9***************988532...5*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-17254323IPR016177DNA-binding domain
CDDcd000181.02E-19254323No hitNo description
SMARTSM003802.7E-28255327IPR001471AP2/ERF domain
PfamPF008477.8E-12255313IPR001471AP2/ERF domain
PROSITE profilePS5103218.729255321IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15255322IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-12356402IPR016177DNA-binding domain
CDDcd000185.12E-16356403No hitNo description
SMARTSM003802.3E-13357403IPR001471AP2/ERF domain
PROSITE profilePS5103216.081357403IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12357403IPR001471AP2/ERF domain
PfamPF008471.6E-8358402IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDMTSGWLGF SLSSSSSAAR GYDAGEGAGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG  60
GSVQYDGQDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSIY DASHADQLKY HHHQDVHHAY  120
PGSPYFQGNG GGGVVIGLDI NNAPPPSHCT GLPDHHFMPA HHGQYSLCPP NQQAAGAGAM  180
AAAPMYSSAA GFDGSANMSI SGIKSWLRQS MYVPEQSTSA IPPSVHAAPS EPPLPAPCVP  240
VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA  300
ARAYDLAALK YWGPATHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557671e-173BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186422.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
TrEMBLA0A3B6HQD80.0A0A3B6HQD8_WHEAT; Uncharacterized protein
TrEMBLA0A446QK880.0A0A446QK88_TRITD; Uncharacterized protein
STRINGTraes_4AS_231DDE5DB.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-97AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]