PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_BB3F89030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 219aa    MW: 24145.9 Da    PI: 5.9635
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_BB3F89030.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.95.9e-3771071100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+l+r+C+++Cvlap++++eq +++fa++hk+FGasn +kll++lp ++r++a+ ++ yeA+ar++dPvyG+v++i++lqqq+
  Traes_4AL_BB3F89030.1   7 PCGACKFLGRRCVNGCVLAPHLCHEQgAAHFAAIHKVFGASNASKLLTSLPATDRREAAVTISYEAQARQHDPVYGCVAHIFALQQQV 94 
                            7*************************89************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                             +l+a+l++lk++
  Traes_4AL_BB3F89030.1  95 VNLQAQLESLKAQ 107
                            *******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3926108IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTGFSSPCGA CKFLGRRCVN GCVLAPHLCH EQGAAHFAAI HKVFGASNAS KLLTSLPATD  60
RREAAVTISY EAQARQHDPV YGCVAHIFAL QQQVVNLQAQ LESLKAQEPV QGYTNTCSVS  120
SPEEDSMKAK VMAYEKGEAR MPHPGHSVKI ERESYFGNDA MTSCTSMQYS QDYNSSHVYT  180
PDYTASFKFN DESIHGSTMF PVDMQDYLQE NGYYDTEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2931037106LOB family transfactor Ramosa2.1
5ly0_B1e-2931037106LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182029.11e-140LOB domain-containing protein 14-like
TrEMBLA0A3B6I2671e-164A0A3B6I267_WHEAT; Uncharacterized protein
TrEMBLA0A446RBJ31e-164A0A446RBJ3_TRITD; Uncharacterized protein
STRINGTraes_4AL_BB3F89030.11e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.18e-50LBD family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]