PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_7B4A599EC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 56aa    MW: 5873.7 Da    PI: 7.5266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_7B4A599EC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.72.6e-08155203258
                   GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfl 258
                            aVn+vl+ hrll++++  +   +++L lv+s+ + v+ + e+ea   n++++ +rf+
  Traes_4AL_7B4A599EC.1   1 AVNCVLAAHRLLRDETGGA--LSDFLGLVRSTGAAVLLLGEHEAAGlNAGRWEARFA 55 
                            8***********6655444..489*******************8777********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.9E-6155IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
AVNCVLAAHR LLRDETGGAL SDFLGLVRST GAAVLLLGEH EAAGLNAGRW EARFAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158067.19e-28scarecrow-like protein 28
TrEMBLW5DQL51e-31W5DQL5_WHEAT; Uncharacterized protein
STRINGSi008220m2e-21(Setaria italica)
STRINGAC234164.1_FGP0042e-21(Zea mays)
STRINGSb10g001690.12e-21(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-11GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]