PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_1D254E0E4.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 330aa    MW: 37116.9 Da    PI: 10.5623
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_1D254E0E4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.6e-16235325199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +t+s+v+   +l lpk+f+++h  k  ++  +tl de+g + + ++  rk +    l++ Wk F+  ++L +gD +vF++++++
  Traes_4AL_1D254E0E4.2 235 FVKPMTQSHVTGGFWLGLPKQFCTKHLPK--RDEWITLVDEKGAESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIHQT 316
                            89************************433..4558***************444444....9999*******************88766 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v++fr+
  Traes_4AL_1D254E0E4.2 317 RF--KVHIFRQ 325
                            66..*****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-23228326IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-21228326IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-25233324No hitNo description
PROSITE profilePS508639.855235326IPR003340B3 DNA binding domain
PfamPF023624.9E-14235325IPR003340B3 DNA binding domain
SMARTSM010191.9E-17235326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
NPSLRKRKRF RKFESRGSRP GTPSVPEPGA CTDHVQQAQA PRADGPDVCG PWTGSGVLLT  60
AHRQSNLLAA AAFLSGLLPI PISSPQRRER GRNPEIAGEK MAGAVAYEEQ RRRQVEENRR  120
KLDQLKLHHL SAALRDAAAA PRPSPAKSAK RKPRGPPPAD APPRRSGRVA SLPEQPNYRF  180
EDTYADIEKS IRGSRTHSTR TDLIDRVYAT EEARTHATDK AEQLQAKLDP SHPSFVKPMT  240
QSHVTGGFWL GLPKQFCTKH LPKRDEWITL VDEKGAESDS YYLARKWGLS AQWKAFAINH  300
KLVDGDCLVF ERIHQTRFKV HIFRQSSYYE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572000.0AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185096.11e-161B3 domain-containing protein Os06g0194400-like isoform X2
SwissprotQ69V362e-89Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A446RIT11e-168A0A446RIT1_TRITD; Uncharacterized protein
STRINGTraes_4AL_1D254E0E4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-50B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]