PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_247FA5037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 142aa    MW: 16017.1 Da    PI: 9.9404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_247FA5037.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.5e-1471117455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Traes_3DS_247FA5037.1  71 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 117
                            799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.80667116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1970132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-1370121No hitNo description
PfamPF000103.2E-1171117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1971129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
QLQPQAPRQI DFSAGTSSKS GVLVTRAAVL DGDSSEVNGL CKEEGTTPVI EDRRPRKRGR  60
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITDLQKKL  120
KDMETERERF LESGMVDPRE RA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260RRPRKRGRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6256840.0AY625684.1 Triticum aestivum bHLH transcription factor (bHLH94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566142.11e-78PREDICTED: transcription factor bHLH13
SwissprotQ9ZPY84e-42AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLQ5DM346e-99Q5DM34_WHEAT; BHLH transcription factor (Fragment)
TrEMBLW5CJH45e-95W5CJH4_WHEAT; Uncharacterized protein
TrEMBLW5DFY81e-100W5DFY8_WHEAT; Uncharacterized protein
STRINGMLOC_69470.15e-93(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.12e-43ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]