PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_E22D9AEAE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 131aa    MW: 14790.9 Da    PI: 8.0577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_E22D9AEAE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.4e-0520571254
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           R +++ +++  L++l+ +      +K + a++L +A eYIk L
  Traes_3DL_E22D9AEAE.1 20 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 57
                           6678889999******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.763857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-81868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-101969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-42062No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MTFGLHKNFF LCCALELQVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA NEYIKFLHDQ  60
VASLTYPYLK NVNPLQQFQQ KGSENAKDDG GEPKKDLRSR GLCLVPVATT YTVASETVPE  120
FWYPTFGGTF R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703067e-76HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567189.11e-71PREDICTED: transcription factor bHLH123
SwissprotQ8GXT32e-39BH123_ARATH; Transcription factor bHLH123
TrEMBLW5DEE32e-95W5DEE3_WHEAT; Uncharacterized protein
STRINGMLOC_37971.24e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-40bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]