PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_D03A43799.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 348aa    MW: 37240.2 Da    PI: 9.9261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_D03A43799.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011321344123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            ++C+ C+++Fs+   L  H r  H
  Traes_3DL_D03A43799.3 321 HVCNSCNRTFSSLKGLGDHSRAkH 344
                            79************9999988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-5321344IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346321348IPR007087Zinc finger, C2H2
PROSITE patternPS000280323344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLATLSVDNH PHVLADLVFK REFELLHSSM TSNISFMGYK FDIIKRSHSC TKQGADSDEE  60
VPLAIPLDFN TDGYKNNEAT HGANNLIVPR PADAPSPIPK AKVEGTNSPG KRKGDDKDKT  120
GTQNSSDGVD NESSDQDVDY PRKKTKDDYN PMETPLNTPQ GKRAKIATPT TGNRTGYVHV  180
ATPHPAAKQA RKSGDHVHVA TPHPAAKQAG KSGDHVHVAT PHPAAKQAHK SGDHVHAATP  240
HPAAKQAHKS GDHVHVATPH PAAKQAHKSG DHVHVATPHP AAKQARKSGD HVHVATPHPA  300
AKHARKTPEN NDDKSKQSAG HVCNSCNRTF SSLKGLGDHS RAKHGDAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686450.0AK368645.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567378.19e-77PREDICTED: histone deacetylase HDT2-like isoform X1
TrEMBLA0A096UPZ30.0A0A096UPZ3_WHEAT; Uncharacterized protein
STRINGMLOC_72623.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-08histone deacetylase 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]