PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_564FE4223.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 73aa    MW: 8090.21 Da    PI: 10.6298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_564FE4223.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1131711055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r R + +N ++ +Lr+++P+      +K++K++iL+ A+eYI++Lq
  Traes_3DL_564FE4223.1 31 RLRGRTLNGKLYTLRSVVPNI-----TKMDKVSILRDAIEYIHQLQ 71
                           677889**************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.962170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-132373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-112773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-62773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-113173No hitNo description
PfamPF000103.6E-93171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
NWSSPDTGYS SSPVVSAAVS ASKSNVVVTR RLRGRTLNGK LYTLRSVVPN ITKMDKVSIL  60
RDAIEYIHQL QEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929341.13e-17PREDICTED: transcription factor bHLH35 isoform X2
RefseqXP_010929342.13e-17PREDICTED: transcription factor bHLH35 isoform X3
SwissprotQ2HIV94e-15BH035_ARATH; Transcription factor bHLH35
TrEMBLM8CG563e-44M8CG56_AEGTA; Transcription factor bHLH35
TrEMBLW5DA237e-47W5DA23_WHEAT; Uncharacterized protein
STRINGGSMUA_Achr6P30900_0016e-17(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.34e-11bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]