PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_2C29058E6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 252aa    MW: 28670.5 Da    PI: 5.128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_2C29058E6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-1535130294
                            EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                            +k+l +sd +++gr+vlpkk  e++       ++ ++ l++ d ++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L++gDf+++
  Traes_3DL_2C29058E6.1  35 QKELRNSDISQLGRIVLPKKESEAYlpilT--SKDGRSLRMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHNLRVGDFIMI 119
                            79999**********************653..445678*****8888*********89999999**99.******************* PP

                            EE-SSSEE..EE CS
                     B3  83 kldgrsefelvv 94 
                            + d++ + ++v+
  Traes_3DL_2C29058E6.1 120 YKDDD-KNRFVI 130
                            *5554.433344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2233135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1833131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-2233134No hitNo description
PROSITE profilePS508639.29134136IPR003340B3 DNA binding domain
SMARTSM010191.6E-1134136IPR003340B3 DNA binding domain
PfamPF023628.7E-1235130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
AAIYFPLVEA VNELDLNRVS LDPNHQVAGL RVILQKELRN SDISQLGRIV LPKKESEAYL  60
PILTSKDGRS LRMHDLLNAQ LWTFKYRYWP NNKSRMYVLE NTGDYVRTHN LRVGDFIMIY  120
KDDDKNRFVI RAKKAGDDLV ASLPQFHEHI SSILPIPEVD DYVSLIPPPA DISAFVPQAD  180
ENYEMFDGIF NSLPEIPVAN VRYSDFFDPF SDCMDMSNPG LNANNSANLA SHFHDERTGL  240
SLFPNPKSGP LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-43301381109B3 domain-containing transcription factor FUS3
6j9b_D7e-43301381109B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751420.0AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179453.11e-179B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-117LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A3B6GUP01e-178A0A3B6GUP0_WHEAT; Uncharacterized protein
TrEMBLA0A453F8M21e-178A0A453F8M2_AEGTS; Uncharacterized protein
TrEMBLA0A453F8M61e-178A0A453F8M6_AEGTS; Uncharacterized protein
STRINGTraes_3DL_2C29058E6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  5. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]