PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_01DA17F63.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 531aa    MW: 59600.9 Da    PI: 8.8172
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_01DA17F63.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-16231031399
                            TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                             + lv+p  f++++ggk  +  t++le+++g++++v +  + + +r++l++GW +Fv+an+++e+ +++F++ g+ +f  +v++f++
  Traes_3DL_01DA17F63.1  23 VHSLVIPEWFVSQFGGKVWR--TVKLESPDGNVYDVGV--TENMNRTILKSGWASFVDANKIEENYSLMFHYLGNARF--KVTIFDS 103
                            5779**********999766..8***************..*********************************98888..9999986 PP

2B346.75.7e-154455261799
                            E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            +l k++++ h gkk + + l+l+   ++r+W+ +l  r++ +r+ + kGW  Fv+ n+L++gD ++Fkl+++ +  +++v ++r+
  Traes_3DL_01DA17F63.1 445 YLEKQYFTGHRGKK-NVISLVLQReGKSRTWDTEL--RRGTDRMRICKGWVAFVRGNRLRVGDLCLFKLMESeEPLKMMVYIIRR 526
                            57788888885554.4466888774566*******..********************************9888*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.11111104IPR003340B3 DNA binding domain
CDDcd100172.96E-1613102No hitNo description
SuperFamilySSF1019361.94E-1814108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-1014104IPR003340B3 DNA binding domain
PfamPF023621.8E-1421103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1721105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-10225320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-10226320IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-9230321No hitNo description
SMARTSM010190.053232326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-15410528IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-14413525IPR015300DNA-binding pseudobarrel domain
CDDcd100179.81E-14416525No hitNo description
SMARTSM010192.0E-5433527IPR003340B3 DNA binding domain
PfamPF023626.1E-12445526IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196463527IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MSDPCECCQI KLKFLRQING NFVHSLVIPE WFVSQFGGKV WRTVKLESPD GNVYDVGVTE  60
NMNRTILKSG WASFVDANKI EENYSLMFHY LGNARFKVTI FDSSGKQKAS CCARMGTAAS  120
DVRNPSTFDV DNSSSSCGGG TQSSPSERSD SDGSQKESSY GYKKSAKKAA ISDSSEGLSA  180
EDSLSRDNLV ESYDVQEHLN DYVLSGKCDL TVAQEAKIQA LVEKIRSEIP VLVVQMKKTS  240
ANFGNLIIRK DYALKYFPCE ATNIILQLPR KNKEWKCRFN PGRRNLYLGY FVHDNCVQEG  300
DICLFQPIAK VKEGRFTVIV HLLHKESVHR SPGGTAGMTH TPTDGRTGAK TSLTARVKEE  360
PATDGEDMSS LGHKEDGDNS EGAPETPFIL PDRASITPAQ EQKVWKKVEA IESTVPVYVA  420
ILNKCNVSRK YGITITMGKQ YVSRYLEKQY FTGHRGKKNV ISLVLQREGK SRTWDTELRR  480
GTDRMRICKG WVAFVRGNRL RVGDLCLFKL MESEEPLKMM VYIIRREKCL D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198702.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A3B6H2X10.0A0A3B6H2X1_WHEAT; Uncharacterized protein
STRINGTraes_3DL_01DA17F63.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-12B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]