PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_DF7E924991.1
Common NameTRAES_3BF108500010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 343aa    MW: 37377.3 Da    PI: 10.2265
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_DF7E924991.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-114896155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           s++kGV   + +grW ++I++      r +r++lg+f   + Aa+a++ a+++++g
  Traes_3B_DF7E924991.1 48 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 96
                           689***9788.8********9......44*************************98 PP

2B393.12e-29162260189
                            EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                            f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+
  Traes_3B_DF7E924991.1 162 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtperTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDS 249
                            89*************************99887766444458999******************************************** PP

                            EEEEE-SS.SE CS
                     B3  80 vvFkldgr.se 89 
                            ++F+ +   +e
  Traes_3B_DF7E924991.1 250 IIFSCSAYgQE 260
                            ***96654334 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-64896IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1548105IPR016177DNA-binding domain
CDDcd000183.23E-2248104No hitNo description
PROSITE profilePS5103220.52149104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1949104IPR001471AP2/ERF domain
SMARTSM003801.5E-2249110IPR001471AP2/ERF domain
PRINTSPR003672.1E-65061IPR001471AP2/ERF domain
PRINTSPR003672.1E-686106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.2E-38157278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-29159266IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-28160252No hitNo description
PfamPF023624.0E-27162265IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394162271IPR003340B3 DNA binding domain
SMARTSM010192.8E-21162270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVEDSSQYSS GASTATTESG TTGRAPTALS LPVAIADESV TSAQSAPSRF KGVVPQPNGR  60
WGSQIYERHA RVWLGTFPDQ DLAARAYDVA ALRYRGRDAA TNFPCAAAEA ELAFLGAHSK  120
AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP LFEKAVTPSD VGKLNRLVVP  180
KQHAEKHFPL KRTPERTTTT GNGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVR  240
EKGLAAGDSI IFSCSAYGQE KQLFIDCKKN TTVNSGKSAS PLPVVETAKG EQVRVVRLFG  300
VDIAGVKRGR AATAEQGPPE LLKRQCVPLP HGQRSPALGA FVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4715926811115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565321.11e-152PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-140Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A077RF860.0A0A077RF86_WHEAT; Uncharacterized protein
STRINGMLOC_56567.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-96related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]