PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_5DC4D39A6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 736aa    MW: 80322.6 Da    PI: 9.7077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_5DC4D39A6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12582628455
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Traes_3B_5DC4D39A6.1 582 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 628
                           799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-49178363IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806578627IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18581643IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-14581632No hitNo description
PfamPF000104.0E-10582628IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-18582640IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16584633IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
SRSSSGSPPL PRNPLAHQRK LHTTTVESHH PPSLPPSPTR TPRRAPRPET RGPHPLREEG  60
EGERAEPPLG ARVRAREDPG FSPSRLRRQR SGLGVAGLPA LDFASPLPIR ARDPRSGLMV  120
MKMEVEEDGA NGGNGGAWTE EDRDLSTTVL GRDAFAYLTK GGGTISEGLV AASSPVDLQN  180
KLQELIESEH PGAGWNYAIF WQLSRTKSGD LVLGWGDGSC REPNDAELAA AASAGNDDAK  240
QRMRKRVLQR LHKAFGGADE EDYAPTIGQV TDTEMFFLAS MYFAFPRRAG APGQVFAAGL  300
PLWVPNSERN VFPANYCYRG YLASTAGFRT ILLVPFETGV LELGSMQQVA ESSDTLQTIK  360
SVFAGTGGNK DIIPSREGNG HIERSPGLAK IFGKDLNLGR SSAGPVIGAS KVDERPWEQR  420
TAGGGSSLLP NVQKGLQSFT WSQARGLNSH QQKFGNGILI VSNEATHGNN RAADSSTTTQ  480
FQLQKAPQLQ KLPLLQKPPQ LVKPLQMVNQ QQLQPQAPRQ IDFSAGTSSK SGVLVTRAAV  540
LDGDSSEVNG LCKEEGTTPV IEDRRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  600
LRAVVPNISK MDKASLLGDA IAYITDLQKK LKDMETERER FLESGMVDPR ERAPRPEVDI  660
QVVQDEVLVR VMSPLENHPV KKVFEAFEEA DVRVGESKLT GNNGTVVHSF IIKCPGSEQK  720
TREKVIAAMS RAMSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-241783639192Transcription factor MYC3
4rs9_A2e-241783639192Transcription factor MYC3
4rqw_B2e-241783639192Transcription factor MYC3
4rqw_A2e-241783639192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1563571RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768200.0AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566142.10.0PREDICTED: transcription factor bHLH13
TrEMBLW5CJH40.0W5CJH4_WHEAT; Uncharacterized protein
STRINGMLOC_69470.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-61bHLH family protein