PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_30A3E17C6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 366aa    MW: 40882 Da    PI: 5.6271
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_30A3E17C6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-1818108199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k +++s+v    +l lp +f+++h  k  +++ ++lede+g  ++ k+   + +++  l++GW++F+  +++k+gD+vvF+l+++ +
  Traes_3B_30A3E17C6.1  18 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKVGDVVVFQLVSSAK 100
                           899********************999533..5679***************..888877..9**********************987666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Traes_3B_30A3E17C6.1 101 F--KVYILRA 108
                           6..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2112109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2413109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-2516107No hitNo description
PfamPF023621.1E-1618108IPR003340B3 DNA binding domain
SMARTSM010197.2E-2018109IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53518109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MERAEEVLVK LPAEHPSFVK HMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN  60
YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FKVYILRANN YTTTDGAIGL  120
LCLEAGKEKI PKEESSNDVK SEAGKEKIPK EESSNDVKSE KKPKVAWSDS SNLASESITD  180
GIKFSDTAID FDDVNDFSSF SIVYDGLVID CEFPDHLRKT YYELCCAQKS FLHKELLKGL  240
NLTLVVGAIM ETIDIAEGIR ACKARAPSCK HFVVWKKNLQ ALKLLGMNVD FLLKRVDDLL  300
SLPAPPRVPA EVKLERAHTV AKIKEVESRI SSVKDTLEEI DMEMEEMESS AKMVDEMMQL  360
LATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189684.10.0B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP991e-156Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A446PLW50.0A0A446PLW5_TRITD; Uncharacterized protein
STRINGTraes_3B_30A3E17C6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]