PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_2DFE8318A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 282aa    MW: 32496.7 Da    PI: 9.8964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_2DFE8318A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-151952771599
                           -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                             +l k++++ h gkk + + l+l+   ++r+W+ +l  r+ s+r+ + kGW  Fv+ n+L++gD+++Fkl++++  ++ v ++r+
  Traes_3B_2DFE8318A.1 195 SRYLEKQYFTGHRGKK-NVISLVLQReGKSRTWDTEL--RRASDRMRICKGWVAFVRGNRLRVGDICLFKLMESELLKMIVYIIRR 277
                           4567778888885554.4466888774566*******..*********************************9999******9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.626180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-7271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-6273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-7475No hitNo description
Gene3DG3DSA:2.40.330.105.1E-16163278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16165278IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-15168276No hitNo description
PROSITE profilePS5086312.055181278IPR003340B3 DNA binding domain
SMARTSM010193.2E-4185278IPR003340B3 DNA binding domain
PfamPF023621.6E-12196277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
IIRKEYALKY FPCEATNIIL QLPRKNKEWK CRFNPGRRNL YLGYFVHDNC VQEGDICLFQ  60
PIAKVKEGRF TIIVHLLHKE SVRRSPGGTA GMTHMATDRR TSANTSLTAR VKEEPATDDI  120
SSLGPEEDVD NSEGASETLF VLPERASITP AQEQKVREKV ETIESTLPVY VAILNKCNVS  180
RKYGIMITMG KQYASRYLEK QYFTGHRGKK NVISLVLQRE GKSRTWDTEL RRASDRMRIC  240
KGWVAFVRGN RLRVGDICLF KLMESELLKM IVYIIRREKC LD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198702.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A3B6FX720.0A0A3B6FX72_WHEAT; Uncharacterized protein
STRINGTraes_3B_2DFE8318A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-07related to vernalization1 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]