PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_4446297C5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 412aa    MW: 44984.3 Da    PI: 9.9446
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_4446297C5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57338.43.5e-1266152597
                 DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                            r w+ eDei +L +l+   + +g++      +++  v  s++  +v+k+++ eK+r+++++++k v++   g     +k++d   f+l
  Traes_3AS_4446297C5.1  66 RRWTTEDEIKILEALVRHVKANGTQ--PGARELITAVGASLERkNVTKTEMYEKVRNIRQRYEKAVST---G--ALPEKDDDLRKFKL 146
                            78****************9999976..567999******9986269********************99...3..44567889999*** PP

                 DUF573  92 skkiWg 97 
                            s+++Wg
  Traes_3AS_4446297C5.1 147 SEQVWG 152
                            *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-1765152IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
PPAKDKKKGK SLAEPSPSGT AKKAKAGAAE KALSELTPAS EGKKKHKAQP EKTGPWTKLE  60
KPGQPRRWTT EDEIKILEAL VRHVKANGTQ PGARELITAV GASLERKNVT KTEMYEKVRN  120
IRQRYEKAVS TGALPEKDDD LRKFKLSEQV WGENAKQIAA ATMAQNEAAS SKSKKKGQTS  180
KEKTEGYSKG GTAKETTASA DETEGYSKSG TAKQATKEKA DEDSKGGSSK KASTADTPAK  240
SRKRGNQKEE LEGDVKTGTT KETVDTTARN GGTSVRSKGV KSDKEKTDED VENPTPKEAM  300
GDAQNGGTHA LFKKEGETHE EKMDTDANVR GMHKGFDELQ KLYPNLTSYV EDIQAQHPCG  360
ETLKRAFEFM DDEKACALES KIKKQRVAEL RIGMRRADTN KEVTNIFIGL LD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571636.11e-102PREDICTED: hepatoma-derived growth factor-related protein 2-like
RefseqXP_004952276.11e-101PREDICTED: hepatoma-derived growth factor-related protein 2-like
TrEMBLW5CJW30.0W5CJW3_WHEAT; Uncharacterized protein
STRINGMLOC_12824.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]