PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_337600412.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 618aa    MW: 67576.2 Da    PI: 6.9608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_337600412.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.7e-13464510455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Traes_3AS_337600412.3 464 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 510
                            799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4860245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18463525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.94E-15463514No hitNo description
PfamPF000103.2E-10464510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18464522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVMKMEVEED GANGGNGGAW TEEDRDLSTT VLGRDAFAYL TKGGGTISEG LVAASSPVDL  60
QNKLQELIES EHPGAGWNYA IFWQLSRTKS GDLVLGWGDG SCREPNDAEL AAAASAGNDD  120
AKQRMWKRVL QRLHKAFGGA DEEDYAPTIG QVTDTEMFFL ASMYFAFPRR AGAPGQVFAA  180
GLPLWVPNSE RNVFPANYCY RGYLASTAGF RTILLVPFET GVLELGSMQQ VAESSDTLQT  240
IKSVFAGTGG NKDIIPSREG NGHIERSPGL AKIFGKDLNL GRSSAGPVIG VSKVDERPWE  300
QRTAGGGSSL LPNVQKGLQS FTWSQARGLN SHQQKFGNGI LIVSNEATHG NNRTADSSTT  360
TQFQLQKAPQ LQKLPLLQKP PQLVKPLQMV NQQQLQPQAP RQIDFSAGTS SKSGVLVTRA  420
AVLDGDSSEV NGLCKEEGTT PVIEDRRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  480
YALRAVVPNI SKMDKASLLG DAIAYITDLQ KKLKDMETER ERFLESGMVD PRERAPRPEV  540
DIQVVQDEVL VRVMSPLENH PVKKVFEAFE EADVRVGESK LTGNNGTVVH SFIIKCPGSE  600
QQTREKVIAA MSRAMSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-23602459192Transcription factor MYC3
4rs9_A3e-23602459192Transcription factor MYC3
4rqw_B3e-23602459192Transcription factor MYC3
4rqw_A3e-23602459192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445453RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768200.0AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566142.10.0PREDICTED: transcription factor bHLH13
TrEMBLW5CJH40.0W5CJH4_WHEAT; Uncharacterized protein
STRINGMLOC_69470.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-60bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]