PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_1FD49785C.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 303aa    MW: 32528.8 Da    PI: 4.8526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_1FD49785C.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-11159201754
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+ +Pk +      K++  ++L  +++Y+k+L
  Traes_3AS_1FD49785C.3 159 MAERRRRKRLNDRLSMLRSAVPKiS------KVDRTATLGDTIDYVKEL 201
                            89*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.068152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14156222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-12158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-14159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8159201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDPLDEESFL EELMPLHREE APAPPYPGSN SMMTISDLLF YGGGKGCTAE ERSGPFQQPM  60
LPSPPAVRPH PHQEFDFNYL SEVCNPWRSC IPDPPAVVQA AAGKAPLTLP LHDAIASSST  120
FVFGGGAGES SGMRSMPASG THPESKLNAG SGTPSKNLMA ERRRRKRLND RLSMLRSAVP  180
KISKVDRTAT LGDTIDYVKE LTERIKTVEE EMGTTPEELN LLKNFSSGGN EGTPTRSSTK  240
LCANVENQGG GDTKIEICCS TNPGALIATV TALDVLGLEI EQCVVSCFSD FAMQASCSQV  300
KSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150230.11e-113transcription factor bHLH61-like
TrEMBLA0A446N2Y40.0A0A446N2Y4_TRITD; Uncharacterized protein
STRINGTraes_3AS_1FD49785C.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.15e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]