PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_1B9CD4863.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 424aa    MW: 45119.1 Da    PI: 7.333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_1B9CD4863.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-053143521255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Traes_3AS_1B9CD4863.1 314 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 352
                            7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.039302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-11312364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-5312356No hitNo description
Gene3DG3DSA:4.10.280.108.7E-9316359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MMASSSSSSD LSADHRLLQD DLPWPSPSSM PPPLAPALHH AVGGNHHQWS QPLMLEQLSS  60
DELEALLSAQ VHQHHSHSQL LAAPLTANPH HQLSSLLMMQ ELGFQWSSSC GAADGDSNET  120
AQDEVKEDAK LPGPLVLPRP SSSSSIAYDD DMAVDVLPSV NVSRLQKIPC PVAAGPFGGR  180
AEATLEMLAS AKFCKSLLGC SQASSTVLLH NGGGTAPLLG MGGHHVAYGP PPPVHRLQGP  240
SSILHTYNKM GVPAALLSGN GSALQAATGR SSGGGGLHDE QQLQMLEVSS KKKPRLLHSR  300
PATNNNILPS FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF LQDQVETLSG  360
PYMRSAKHKK ARTTQQRGPS DTGDQKEEAK VDLRSRGLCL VPLACTSYVT NENGIWAPPN  420
FRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755313.11e-131PREDICTED: transcription factor bHLH110-like isoform X2
TrEMBLW5CJ100.0W5CJ10_WHEAT; Uncharacterized protein
STRINGBRADI2G03427.11e-130(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-41bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]