PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_16C02FAE7.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 374aa    MW: 41466.2 Da    PI: 5.5189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_16C02FAE7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1818108199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +++s+v    +l lp +f+++h  k  +++ ++lede+g  ++ k+   + +++  l++GW++F+  +g+k+gD+vvF+l+++ 
  Traes_3AS_16C02FAE7.2  18 FVKYMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHGIKVGDVVVFQLVSSA 99 
                            8999*******************999533..5679***************..888877..9**********************98766 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  Traes_3AS_16C02FAE7.2 100 KF--KVYILRA 108
                            66..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2112109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2413109IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-2516107No hitNo description
PfamPF023627.4E-1718108IPR003340B3 DNA binding domain
SMARTSM010192.0E-2018109IPR003340B3 DNA binding domain
PROSITE profilePS5086313.90218109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MERAEEVLVK LPAEHPSFVK YMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN  60
YDAKYLGAKQ GLSAGWRGFA INHGIKVGDV VVFQLVSSAK FKVYILRANN FTTTDGALGL  120
LCLEDGKEKI PKEESSNDVK SEAGKENIPK EESSNDVKSE AGKEKILKEE SSNDVKSEAV  180
KEKIPKEESS IDVKSEEKPK VAQSDSSNLA SESITDGIKF SDTVIDFDNV KDFSSFSIVV  240
DGLVIDCEFP DHLRETYYEL CCAQKSFLHK ELLKGLNLTL VVGAIMETID IAEGIRACKA  300
RTPSRRDFVV WKNLQALKLL GMNVDFLLKR VDDLLSLPAR PRAPAEVKLE RARTVAKIKA  360
VVQDFECEGH SGGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189684.10.0B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP991e-134Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A3B6EEP60.0A0A3B6EEP6_WHEAT; Uncharacterized protein
TrEMBLA0A446NB130.0A0A446NB13_TRITD; Uncharacterized protein
STRINGTraes_3AS_16C02FAE7.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]