PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_A8E345835.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 403aa    MW: 43599.4 Da    PI: 9.0611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_A8E345835.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013376399123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            ++C+ C+++Fs+   L  H r  H
  Traes_3AL_A8E345835.2 376 HVCNSCNRTFSSLKGLGDHSRAkH 399
                            79************9999988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.346376403IPR007087Zinc finger, C2H2
PfamPF139121.9E-5376399IPR007087Zinc finger, C2H2
PROSITE patternPS000280378399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTENHRFWGV VVKPGETVKC DPGDSHYHIS TIALEPGKAE EDVQVFVKID DTRIMLGTLS  60
VDNHPHVLAD LVFKEEFELF HSSMTSNISF MGYKFDIIKR FHSCTKQGAD SDEEVPLAIP  120
LDINTDGYKN NEATHGANNL LIAPRPADAP SSIPKAKVEE TNSPGKQKGD DKDKTGMQNS  180
SDGLDNESSD QDVDYPRKRT KDDYNPMETP LNTPQGKRAK IATPTTGNKT GYVHVATPHP  240
AAKQARKPGD HVHVATPHPA AKQAGKSGDH VRVATPHPAA KQARKSGDHV HVATPHTAAK  300
QAHKSGDHVH VATPHPAAKQ ARKSGDHVHV ATPHPAAKQA RKSGDHVHVA TPHPAAKHAR  360
KTPENNDDKS KQSAGHVCNS CNRTFSSLKG LGDHSRAKHG DAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686450.0AK368645.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567378.11e-107PREDICTED: histone deacetylase HDT2-like isoform X1
TrEMBLW5CFM70.0W5CFM7_WHEAT; Uncharacterized protein
STRINGMLOC_72623.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-15histone deacetylase 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]