PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_8EF6D8BB1.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 844aa    MW: 95110.8 Da    PI: 7.0494
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_8EF6D8BB1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1153.64.2e-48241393117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e k+rwlk++e+++iL+n e + +++ +++rp+sgs++L+nr++ r+fr+DGy w+kkk+gk+ +E+he LKv++v++l+cyYa++e
  Traes_3AL_8EF6D8BB1.2  24 REvKTRWLKPREVLDILQNCELFGIQNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKNGKSGNEAHEYLKVDNVKALNCYYARAE 111
                            56699*********************************************************************************** PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            +np f rr+yw+Le ++e+ivlvhy++v
  Traes_3AL_8EF6D8BB1.2 112 NNPRFMRRIYWMLEPAYEHIVLVHYRDV 139
                            *************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.06519145IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-5322140IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4326139IPR005559CG-1 DNA-binding domain
CDDcd001022.79E-5314399No hitNo description
SuperFamilySSF812961.56E-12315398IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.108.5E-4316405IPR013783Immunoglobulin-like fold
PfamPF136375.0E-9521572No hitNo description
SuperFamilySSF484032.95E-14522613IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-14523616IPR020683Ankyrin repeat-containing domain
CDDcd002041.66E-8524611No hitNo description
PROSITE profilePS5029715.379524584IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0061552581IPR002110Ankyrin repeat
PROSITE profilePS5008811.06552584IPR002110Ankyrin repeat
SMARTSM000150.0086709731IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.78E-5709759IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.876710739IPR000048IQ motif, EF-hand binding site
PfamPF006120.022711731IPR000048IQ motif, EF-hand binding site
SMARTSM000150.013732754IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468733761IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041734754IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MVWFVTSLLH FVCDSGHDIL NLQREVKTRW LKPREVLDIL QNCELFGIQN RTPQRPPSGS  60
WFLFNRRVHR FFRNDGYVWQ KKKNGKSGNE AHEYLKVDNV KALNCYYARA ENNPRFMRRI  120
YWMLEPAYEH IVLVHYRDVL EGSISVSVLN GSPTSNQNGS ASRADAHSSP GLTSEIVAPL  180
LNSCSPGSAE EVSSQIPTIN NETNDISLFD WRRTLEMQLS LENKERHDVN TDEVLPNHDP  240
IPAHGIQNEE LDACINLADV FDLGFSEDNH AEGSHPYPDP IDVLKYSETW LEDDQLKSIL  300
HSAPVTIDEN QWFHLHEVSP EWAFCSESAK VVIVGDFPCN LSNSSWVLFG DVKVPAVVVQ  360
QGVIRCYTPP YLGAGKVRMC MLNENGKPCT EDREFEFVEK PTNTMINGNG KPCSEAREFE  420
FQQRPTKSDN GLLLLINYVQ MLFDSHGCEL FSKFRLPLPN ARSGFPVNPS EIIGRTCEQL  480
DHENAVNCIM EVMLNNKFQD WLSSKFEQNS EGEYLLPKQY HGVIHTIAAL GYDWALKPLL  540
SNGVPINYRD ANGWTALHWA ARFGREQMVA VLVVAGAAVG ALSDPTAEDP AAKTPASIAS  600
AYGFIGISAF LSEAQLTSTL DSLESKENGK PVDHNGGVST SNAVDRVSDK CAHVDGGTDD  660
QLALKDSLGA IRNAVQAAGR IQATFRVFSL KKKKQKALQN GDSSASPSML ERATLSIQKN  720
FRRWKKRKEY QKIRKNVIKI QARFRAHRER NKYKELLQSV GILEKIMLRW FRKGVGLRGI  780
NSRAMPIDQD EEEDIVKVFR KERVETAVSE AVSRVSAIVG CPVARLDYRR MLEMHQQAKI  840
GHGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721727RRWKKRK
2721728RRWKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6866960.0KC686696.1 Triticum aestivum calmodulin-binding transcription activator 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564956.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
TrEMBLW5CET40.0W5CET4_WHEAT; Uncharacterized protein
STRINGMLOC_44450.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.12e-95Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]