PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_1D19F288D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 251aa    MW: 28555.4 Da    PI: 5.128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_1D19F288D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-1534129294
                            EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                            +k+l +sd +++gr+vlpkk  e++       ++ ++ l++ d ++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L++gDf+++
  Traes_3AL_1D19F288D.1  34 QKELRNSDISQLGRIVLPKKESEAYlpilT--SKDGRSLRMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHNLRVGDFIMI 118
                            79999**********************653..445678*****8888*********89999999**99.******************* PP

                            EE-SSSEE..EE CS
                     B3  83 kldgrsefelvv 94 
                            + d++ + ++v+
  Traes_3AL_1D19F288D.1 119 YKDDD-KNRFVI 129
                            *5554.433344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1832130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-2232133No hitNo description
Gene3DG3DSA:2.40.330.101.1E-2232134IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1133135IPR003340B3 DNA binding domain
PROSITE profilePS508639.29133135IPR003340B3 DNA binding domain
PfamPF023628.6E-1234129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
AIYFPLVEAV NELDLNRVAL DPNHQVAGLR VILQKELRNS DISQLGRIVL PKKESEAYLP  60
ILTSKDGRSL RMHDLLNAQL WTFKYRYWPN NKSRMYVLEN TGDYVRTHNL RVGDFIMIYK  120
DDDKNRFVIR AKKAGDDLVA SLPQFHEHIS SILPIPEVDD YVSLIPPPAD ISAFAPQADE  180
NYEMFDGIFN SLPEIPVANV RYSDFFDPFS DCMDMSNPGL NANNSANLAS HFHDERTGLS  240
LFPNPKSGPL M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-43291371109B3 domain-containing transcription factor FUS3
6j9b_D7e-43291371109B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751420.0AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179453.11e-177B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-116LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A3B6EJ751e-178A0A3B6EJ75_WHEAT; Uncharacterized protein
STRINGTraes_3AL_1D19F288D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  5. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]