PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_0BDB63436.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 36aa    MW: 4418.89 Da    PI: 11.7264
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_0BDB63436.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.66.1e-08527122
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.p 22
                           s y+GV++++++gr++A+++d  
  Traes_3AL_0BDB63436.1  5 SIYRGVTRHRWTGRYEAHLWDnS 27
                           67*****************9933 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-5530IPR016177DNA-binding domain
PfamPF008471.5E-5530IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 36 aa     Download sequence    Send to blast
GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610101.25e-19AP2-like ethylene-responsive transcription factor AIL5
RefseqXP_010277520.15e-19PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
RefseqXP_019055717.15e-19PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
RefseqXP_019055718.15e-19PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ6PQQ36e-20AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A371E0A76e-18A0A371E0A7_MUCPR; AP2-like ethylene-responsive transcription factor AIL6 (Fragment)
TrEMBLA0A3S3Q2B26e-18A0A3S3Q2B2_9MAGN; AP2-like protein ethylene-responsive transcription factor AIL6
TrEMBLA0A427AHU06e-18A0A427AHU0_ENSVE; Uncharacterized protein
STRINGXP_006491760.12e-19(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-22AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]