PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_D05DC56BD.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 987aa    MW: 109710 Da    PI: 5.9058
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_D05DC56BD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.96.1e-56211363117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e
  Traes_2DS_D05DC56BD.2  21 QEaQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGE 108
                            5559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            en++fqrr+ywlLee + +ivlvhyle 
  Traes_2DS_D05DC56BD.2 109 ENENFQRRTYWLLEEGFMNIVLVHYLEI 136
                            *************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.10316142IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-7396483IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.13E-18397482IPR014756Immunoglobulin E-set
PfamPF018332.7E-7397470IPR002909IPT domain
SuperFamilySSF484032.21E-13574690IPR020683Ankyrin repeat-containing domain
CDDcd002041.88E-10575688No hitNo description
Gene3DG3DSA:1.25.40.202.6E-13578691IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.247595690IPR020683Ankyrin repeat-containing domain
SuperFamilySSF525403.45E-8800853IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.5802824IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627804832IPR000048IQ motif, EF-hand binding site
PfamPF006120.0053804823IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67826850IPR000048IQ motif, EF-hand binding site
PfamPF006126.2E-5827847IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
RGDLGLRLRA IPLGYIPQIL QEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHIWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEIKGGK QSFSRSKEAE DSPACSNSFA SQSQVASQTM DAESPYSGQI  180
SEYEDAETGY QDENQARTAN ISNNFVTHHG IASVFNDVGA GLRSGSKTAL DSVHFGEPFP  240
EYPTGFTEPT LYSSVTTMGS NNLDDNSRLE TLMTEALYTN NLTQKETDAL SAAGMTSSQV  300
HNDSYTDGSM GYPLLKQSSL DLFKIEPNGL KKFDSFSKWM SDELAADLDI KSTSDAFWSS  360
TETVNVADGS SMSIPMNEQL DAYVVSPSLS QDQLFSIIDV SPSWAYTGSQ NKVLITGTFL  420
TNKEHVENCK WSCMFGDVEV PVEVLADGSL RCYTPVHQSG RVPFYVTCSN RVACSEVREF  480
EFHDSETQHM EAADPHITGI NEMHLHIRLE KLLSLGPDDY EKYVMSGGNE KSELISTIGS  540
LMLDDKFTNL SAPSDEEFSA AQDKNLEKSV KDKLYYWLIH KIHDDGKGPN VLGKEGQGVI  600
HLVAALGYDW AIRPIIAAGV HVNFRDVRGW TALHWAACLL FRERTVGALI TNGAAAGALT  660
DPTPHFLSGR TPADLASDNG HKGIAGFLAE SALTSHLSAL TLKEAKGCNV EEICGSAEAD  720
GFAEPSSAQL SRQDSQAESL KDSLSAVRKS TLAASKIFQA FRVESFHRKK VVEYGDDDCG  780
LSDERTLSLV SLKNTKSGQN DMPHSAAVRI QNKFRGWKGR KEFMIIRQKI IKIQAHIRGH  840
QVRRNYKKVI WSVGIVEKVI LRWRRKGRGL RGFQPDKQLE GPSSQIQPAE GGSAEAEDEY  900
DFLKDGRKQA EGRLQRSLAR VKSMTQYPEA REQYSRLQAC VTELQESKAI QDKMLSDAAG  960
GDGGDFMVDL EDLCADELLD TPMSTIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235561.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
TrEMBLW5C8N00.0W5C8N0_WHEAT; Uncharacterized protein
STRINGBRADI1G21372.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]