PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_6BAF1825F.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 378aa    MW: 41244.6 Da    PI: 5.5292
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_6BAF1825F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731101.6e-3474173297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                            lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ + sg  +sf+++h+
  Traes_2DS_6BAF1825F.1  74 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRGSGAAFSFRSPHE 161
                            79************************99877778***************************************8889*********** PP

                 DUF573  86 qkifelskkiWg 97 
                            q ife+++ iW+
  Traes_2DS_6BAF1825F.1 162 QAIFEIARNIWR 173
                            ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-3175172IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLPAGDGSSA AVAALSFTDA DGDDYSEDGD FTGAPFLEPP DPSLPDPTSS SATTLLPTGG  60
SGGQASSGGE RRPLFQRLWT EEDEIVILRG FAEFTAARGT AFASHQYDTD PFYEDMRRRL  120
QLDFSKSQLV EKLRRLKRKY RNCVSRLRGS GAAFSFRSPH EQAIFEIARN IWRPTNKHGR  180
DPSADSDDEE AVVAAAAVAA TSVPANASPN GEVKSPPGRQ RRRRRSVESP APTAPAAVPA  240
TILVQPPQPM QVQVPVSVPV KMDDSLPALP QAPMPVTVTM EGSEPLKFPV MSPQSGVVDV  300
EKNFLTPMFK EMIHAVINMG SSPFGMKLPE PPHGLPMEGE KWRNQRILEL EVYLKRIELL  360
QDQVKATLEE LKSSTPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767670.0AK376767.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135H11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755634.11e-179PREDICTED: uncharacterized protein LOC100825486
TrEMBLW5C5R20.0W5C5R2_WHEAT; Uncharacterized protein
STRINGBRADI1G20210.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-35DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]