PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_DCD7B13A8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 435aa    MW: 46000.3 Da    PI: 7.1365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_DCD7B13A8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-053203571254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Traes_2DL_DCD7B13A8.1 320 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 357
                            677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.017308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-5318361No hitNo description
SuperFamilySSF474593.53E-11318376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-8318366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGDHQLMHAA PAMYNGGGAG AVSHGMWWNS NATAAVPAAA CSTELAGFNT WPAGLAAGGY  60
DVGADGGKQA KSCTTTASSE SPGNNSSLTF QETASINDPA AAGFTDWNNP YMSSGAGNMH  120
GFLQVGHHDM SSRTDQQSMM NAVAAPNNLD LALQGHHHHQ QQQQDDHHRQ QQLLSSLGAP  180
ELLLSPNSPY GFQSSLLRSL IEPTGKPAPA AGLLQQYQYQ QMGGQTGARE PLQFTNDAAF  240
WNQSAGFGMG MAAPPATDNT SVRAVKQPSP APRGANLALK TVLEGVGDSS SIVAKKASGE  300
PAFKKPRMET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHDQ  360
VGVLSAPYLK SGHHQHQVPQ YLKSSSNGSP DKSCKDGGEV SLKGRGLCLV PISSTFAVAS  420
DVPVDFWNPF GPQFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643030.0AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168093.10.0transcription factor bHLH112-like
TrEMBLW5C1400.0W5C140_WHEAT; Uncharacterized protein
STRINGTraes_2DL_DCD7B13A8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-45bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]