PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_BB8506245.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 234aa    MW: 25185.7 Da    PI: 7.796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_BB8506245.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-13122208595
                            -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
                     B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                              +s+v +  ++v+p++ a    +k+ +s   tl + +grsWe+++  ++++    l++GW++F+ +n L+ gD +vF+l+  + ++ 
  Traes_2DL_BB8506245.2 122 VCKSHVQQPFQVVVPRSLAPFLPSKP-TS--ATL-TWQGRSWEMRF--TGGRHIQRLEAGWRSFALDNALRLGDGCVFELVgCDgEGI 203
                            567999999999*****996666554.33..443.3699*******..88888889***********************994444444 PP

                            ..EEE CS
                     B3  91 elvvk 95 
                             ++v+
  Traes_2DL_BB8506245.2 204 VFRVQ 208
                            45555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-16115212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-16115212IPR015300DNA-binding pseudobarrel domain
CDDcd100177.85E-14116211No hitNo description
SMARTSM010196.6E-4118213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421118213IPR003340B3 DNA binding domain
PfamPF023621.6E-10121200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLFFSIPSSS QILAMAEPIP ADSSTAVTPP VYRRRNSSEE SRGISSNLFG QGNLNPFCTT  60
FFDAGGKDHG VASSAGETSQ AAISAGPPDK LDPESAKACL EVEKTQPRIL PLLGKPYFAC  120
VVCKSHVQQP FQVVVPRSLA PFLPSKPTSA TLTWQGRSWE MRFTGGRHIQ RLEAGWRSFA  180
LDNALRLGDG CVFELVGCDG EGIVFRVQVL RAEIPASIRE RAGGYTPSSA IVLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147560.11e-153B3 domain-containing protein Os04g0386900-like
SwissprotQ7XLP47e-63Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A3B6DDM41e-171A0A3B6DDM4_WHEAT; Uncharacterized protein
STRINGTraes_2DL_BB8506245.21e-171(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]