PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_474B433DF.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 886aa    MW: 98281.2 Da    PI: 5.1935
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_474B433DF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.84.9e-54121273117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e k+rwlk++e++ iL n+e+ ++t+e++++p+sg+l+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg++++l+cyYah+e
  Traes_2DL_474B433DF.1  12 REaKSRWLKPSEVYYILLNHEQLQITHEPPNKPPSGALFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNIDALSCYYAHGE 99 
                            4559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            +np fqrrc+w+Le ++++ivlv+y+ev
  Traes_2DL_474B433DF.1 100 QNPYFQRRCFWMLEPAYDHIVLVQYREV 127
                            **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.6857133IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4613126IPR005559CG-1 DNA-binding domain
CDDcd001020.0078448532No hitNo description
SuperFamilySSF812966.84E-16449531IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.106.1E-7449540IPR013783Immunoglobulin-like fold
PfamPF018331.9E-7449530IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.4E-15641735IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.15E-15642737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.433643735IPR020683Ankyrin repeat-containing domain
CDDcd002043.83E-9648735No hitNo description
PfamPF127964.1E-6657736IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.167676708IPR002110Ankyrin repeat
SMARTSM002489.9E-5676705IPR002110Ankyrin repeat
PROSITE profilePS500967.218797826IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.462856884IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MSQSFDINVL LREAKSRWLK PSEVYYILLN HEQLQITHEP PNKPPSGALF LYNRRVNRFF  60
RKDGYAWRRK KDGRTVGEAH ERLKVGNIDA LSCYYAHGEQ NPYFQRRCFW MLEPAYDHIV  120
LVQYREVAEG RYYSTLSNGS AGSLSTLSYP NDIHGKHGST SDFSEGNESH QSSVTEVSSY  180
SANKEYNHDS GVLLSIPELQ QSTVMGIPEL DQSSLERSSE FCMVNNNDST NTSGLNQALK  240
SIAEQLSLGD DDYIYINQAR SLDFTTNTEA ADVQGNQTNN SLADDEANQI RPEGAHGVGR  300
GISSSWENVL QSDLGLPASS TYQFGAHYQQ SSEYQPPGGL DSSNLQLQIS AAKRFLLGSE  360
DTIDSPSYNF IPRDEGINGI NTLSAHDSSL ESCLNPDWQR TTPVTLQSSS YQSNSCGYEI  420
SEFFDNGQFE PSSEEDTRLA LKQKQQFSIR EISPEWAFCY EITKVIITGD FLCDPSNICW  480
AVMFGDTEVP VEIVQPGVLR CHTPLHSAGK LTLCITTGNR KVCSEIKDFE FRAKSTASSF  540
TDFAPSSMKS TEELSLIAKF ARILLCDNRS SAASGDDPQP GQSPKLKMNE DNWQRLINEL  600
DVGCENPLSR VDWIMEELLK SKLQQWLSLR LQGDDGTCSL SKNEQGIIHL ISALGYDWAL  660
SSVLGAGVGI NLRDSNGWTA LHWAAYYGRE KMVAALLAAG ASAPAVTDPT AQDPVGKSAA  720
FLASERGHVG LAGYLSEVAL TSYLASLTIE ESGISEGLAA IEAERAVESI SQRSAQLHGG  780
TEDELSLKDS LAAVRNAAQA AARIQNAFRA FSFRRRQHKD ARLKDEYGMT QEDIDELAAA  840
SRLYYQHHVS NGQFCDKAAV SIQKKYRGWK GRKNFLQMRR NVVKIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3693500.0AK369350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2089K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239810.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X2
TrEMBLM8BQN80.0M8BQN8_AEGTA; Calmodulin-binding transcription activator 4
STRINGMLOC_58709.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-108Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains