PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_3C1E0538E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 597aa    MW: 63613.1 Da    PI: 7.3812
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_3C1E0538E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.2e-12262318155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a+++a++k++g
  Traes_2DL_3C1E0538E.2 262 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 318
                            78*******************77776664346655.77******************98 PP

2AP251.72.1e-16363412355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  Traes_2DL_3C1E0538E.2 363 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 412
                            9***************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-9262318IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-14262327IPR016177DNA-binding domain
CDDcd000184.62E-17262326No hitNo description
SMARTSM003807.9E-23263332IPR001471AP2/ERF domain
PROSITE profilePS5103217.069263326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-13263327IPR001471AP2/ERF domain
PRINTSPR003674.3E-6264275IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17361421IPR016177DNA-binding domain
CDDcd000181.01E-22361422No hitNo description
SMARTSM003801.1E-32362426IPR001471AP2/ERF domain
PROSITE profilePS5103218.979362420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17362420IPR001471AP2/ERF domain
PfamPF008474.4E-11363412IPR001471AP2/ERF domain
PRINTSPR003674.3E-6402422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MTNNNGNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQH QGLFYPSSVA AAYSLGGDVA  60
TDGYYSQLAS MPLKSDGSLC IMEALRRTDQ QDHHGPKLED FLGAGQPAMA LSLDNTSNFY  120
YYGGGGGAGG QHGQSHGGSF LQQAYDVYSG PATASVLAAN EDAAAATAMA NWVQVARGAT  180
AYATAENVLS AAADRQQHLH HHPLALSMSS AGSLSSCVTA GAEYGGVGAT VDGGRKRGGA  240
TAGQKQPVHH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD  300
MEEKAARAYD QAALKYWGPS THINFPLEDY QQELEEMKNM TRQEYVAHLR RKSSGFSRGA  360
SMYRGVTRHH QHGRWQARIG RVSGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLNAVTNFD  420
ITRYDVDKIM ASNTLLPGEH ARRNKDDNAA PLPLPAPDDC AASALVPVST PGTDTGGSGQ  480
HRYHDVMSSG EAFSALHDLV TVDGHTAQGG NGAHVHMSMS GASSLVTSLS NSREESPDRG  540
GGLSMLFAKP PQQPATTTAA SPKLMSTLKP LGSWASSARP AAVSIAHMPM FAAWSDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-175BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155443.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3B6DCN20.0A0A3B6DCN2_WHEAT; PARG-2D
STRINGTraes_2DL_3C1E0538E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-122AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]