PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_2128A95BD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 267aa    MW: 30021.4 Da    PI: 8.4505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_2128A95BD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.61.2e-2836141198
                            EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            f+k+ltpsdv+k++rlv+pk++ae++             ++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++g +v
  Traes_2DL_2128A95BD.1  36 FEKTLTPSDVGKLNRLVIPKQHAERYfplnggdsP--GDKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGHIV 121
                            99****************************76332..235667999****************************************** PP

                            EEEE-SS..SEE..EEEEE- CS
                     B3  81 vFkldgr..sefelvvkvfr 98 
                             F++++   ++ +l+++ +r
  Traes_2DL_2128A95BD.1 122 HFERVRGlgTGDRLFIHCRR 141
                            ***88554455566666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-4028147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2932145IPR015300DNA-binding pseudobarrel domain
CDDcd100174.80E-2734141No hitNo description
PROSITE profilePS5086312.95736142IPR003340B3 DNA binding domain
PfamPF023621.9E-2636142IPR003340B3 DNA binding domain
SMARTSM010191.4E-2236142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAMHSLSQGH PQAWPWGVAM YTNLHYHHQH EREHLFEKTL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP GDKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGHI  120
VHFERVRGLG TGDRLFIHCR RRGESAPPPP VRVPPPALNA GEQQPWSPMC YSTSGSYPTS  180
PANSHVYRRS VEQDHSDMLH AGDSRREADA KSSTASGPPS RRLRLFGVNL DCGPEPEAEA  240
ATPMYGYTHH SPYAAAVATV PTYWGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-48311423113B3 domain-containing transcription factor NGA1
5os9_B1e-48311423113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195164.10.0B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-127Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A3B6DKI00.0A0A3B6DKI0_WHEAT; Uncharacterized protein
STRINGTraes_2DL_2128A95BD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.29e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]