PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_01D9C842D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 77aa    MW: 8373.35 Da    PI: 5.5942
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_01D9C842D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP75.22e-231622180
                    TCP 21 RvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaessss 80
                           RvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++                     +++ss
  Traes_2DL_01D9C842D.1  1 RVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELdaaafpnhpasA---------NKQSS 62
                           9********************************************666553332210.........11111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136923.835142IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-22170IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
RVRLSVATAI QFYDLQDRLG YDQPSKAVEW LIKAAAAAID KLPELDAAAF PNHPASANKQ  60
SSALHAEVDG SQLQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-211431355Putative transcription factor PCF6
5zkt_B7e-211431355Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703481e-100AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165443.18e-46transcription factor PCF6-like
SwissprotA2XMN15e-21PCF6_ORYSI; Transcription factor PCF6
SwissprotQ10CE85e-21PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A1D5UKV22e-44A0A1D5UKV2_WHEAT; Uncharacterized protein
STRINGTraes_2DL_01D9C842D.13e-48(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-20TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]