PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_EEE045515.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 377aa    MW: 41050.4 Da    PI: 5.3282
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_EEE045515.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.64.5e-3474173297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                            lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++ +++++sksqlveK+rrLK+K++++v++ + sg  +sf+++h+
  Traes_2BS_EEE045515.2  74 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRGLQLDFSKSQLVEKLRRLKRKYRNCVSRlRGSGAAFSFRSPHE 161
                            79************************99877778***************************************8889*********** PP

                 DUF573  86 qkifelskkiWg 97 
                            q ife+++ iW+
  Traes_2BS_EEE045515.2 162 QAIFEIARNIWR 173
                            ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-3075172IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLPAGDGSSA AVAALSFTDA DGDDYSEDGD FTGVPFLEPP DPSLPDPTSS SATALLPAGG  60
SGGQASSGGE RRPLFQRLWT EEDEIVILRG FAEFTAARGT AFASHQYDTD PFYEDMRRGL  120
QLDFSKSQLV EKLRRLKRKY RNCVSRLRGS GAAFSFRSPH EQAIFEIARN IWRPTNKHGR  180
DPSADSDDEE AVVAAAAVAA TSVPANTSPN GEVKSPSGRQ RRRRRSVESA PTAPAAVPAT  240
ILVQPPQPVQ VQMPVSVPVK MDDSLPALPQ APMPVTVTME GSEPLKFPVM SPQSGVLDVE  300
KNFLTPMFKE MIHAVINMGS SPFGMKLPEP PHGLPMEGEK WRNQRILELE VYLKRIELLQ  360
DQVKATLEEL KSSTPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767670.0AK376767.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135H11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461092.11e-179hypothetical protein SORBIDRAFT_02g040550
TrEMBLW5BPW50.0W5BPW5_WHEAT; Uncharacterized protein
STRINGSb02g040550.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-35DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]