PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_5B00A8C50.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 950aa    MW: 104502 Da    PI: 6.7145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_5B00A8C50.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56e-19363462198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  Traes_2BS_5B00A8C50.1 363 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSR 449
                            99**************************555567778***************9989999999***9.********************8 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  +++lv+++++
  Traes_2BS_5B00A8C50.1 450 IE-PGGKLVMGFRK 462
                            87.77777877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-31355472IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-21360463IPR015300DNA-binding pseudobarrel domain
CDDcd100174.30E-24361462No hitNo description
SMARTSM010194.0E-22363463IPR003340B3 DNA binding domain
PfamPF023624.6E-16363462IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547363464IPR003340B3 DNA binding domain
PROSITE profilePS5105014.811624674IPR011124Zinc finger, CW-type
PfamPF074968.2E-12629671IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MAGMGAAAAA RCMNAACGAP APGAGDWRKG WPLRSGGFAV LCDKCGLAFE QFVFCDIFHQ  60
KESGWRDCSF CGKRLHCGCV ASKNSFDLLD SGGVQCANCM KNPGAHPVSC QVAPKLFLPP  120
QNNQRLFGKS DELLPGRPLE SPSLMIDSRN DDIAIIAKSN HPFMVKNLEI GQSSNNLRQK  180
EIENGARQIK WEQPTLSIGD MGRMPFLIRP QSALESPQSQ CTRRDDNRDP TADSTTSESI  240
SEAGLSMSLG IANNGNKMEA TSTMERPMVS PTTPFSEGRE LATTLSPFQH AQRARHFLTR  300
PSRVAEGAAF DPMRDGFPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV  360
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN  420
NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIATG  480
SLLGDSFFSN TNENLSIVSG YSGFLQSMKG AADLQPSSLF DHHANSADGE VSWLKADRFG  540
GRPDEGSFQF LHKKSRNIGS KSRRLLMDNE EALELKLSWE EAQELLRPAP SAKPTVVMIE  600
DYEFEEYDEP PVFAKRSIFT SRSTGEQDQW IQCDDCSKWR RLPLNVIIAS KWRCADNTWD  660
PKSCSCSAPE ELAHKELQSI LQQYEEIRRR KSNYFLKQSI PEMDASSLDA LATAAVFGEV  720
GNQGAASVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK  780
KQRQSEREEA EASKRISWVG RDEPEGSNLS RSPQTVDTMR DGDVIMFDKA DASKGHIDLN  840
FHPASREEEQ QHGGQPRVSM VSLLEVANRP LESYMKQNGL VSLAAEQGSS SGTATVPSQP  900
APMESEERPS DEGRAVPVEQ EREPTDNMAV DEAAGENQGH AASASDIAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-663414652126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1769780RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158213.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A3B6C2S50.0A0A3B6C2S5_WHEAT; Uncharacterized protein
STRINGTraes_2BS_5B00A8C50.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-177HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]