PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_00DF01F06.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 102aa    MW: 11686.5 Da    PI: 7.1789
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_00DF01F06.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-126.11.5e-082155336
                   CG-1  3 ke.kkrwlkneeiaaiLenfekheltlelktrpks 36
                           +e ++rwl+++ei++iL n++k++++ e+++rp+s
  Traes_2BS_00DF01F06.1 21 QEaQNRWLRPTEICQILSNYKKFSIAPEPPNRPPS 55
                           5559*****************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143716.27416102IPR005559CG-1 DNA-binding domain
PfamPF038598.1E-72255IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAEMHKYGLS NQPPDIPQIL QEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSMPSPY  60
LEFRTNLIEN VYTTVAIYAF SPIRLDGVDL CSRVLCSSTL FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002377e-60FP100237.1 Phyllostachys edulis cDNA clone: bphyst001c17, full insert sequence.
GenBankFP0935317e-60FP093531.1 Phyllostachys edulis cDNA clone: bphyem002j22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235561.11e-29PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
SwissprotQ6NPP46e-17CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLW5BHU95e-71W5BHU9_WHEAT; Uncharacterized protein
STRINGMLOC_63299.16e-31(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.37e-12ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]