PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_FE46FC938.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 427aa    MW: 46265.8 Da    PI: 7.8114
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_FE46FC938.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.75.7e-08771111655
                    AP2  16 vAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +A++rd      + k+++lg f+ta  Aa+a+++a+ k++g
  Traes_2BL_FE46FC938.1  77 FAQCRD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 111
                            5999**......55************************998 PP

2AP243.39.1e-14153203155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+ +++a+ k +g
  Traes_2BL_FE46FC938.1 153 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 203
                            89********.7******5553..2.26**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-1371125IPR001471AP2/ERF domain
PROSITE profilePS5103211.03478119IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-981120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-1184119IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17153212IPR016177DNA-binding domain
CDDcd000186.63E-26153213No hitNo description
PfamPF008477.1E-10153203IPR001471AP2/ERF domain
SMARTSM003801.3E-33154217IPR001471AP2/ERF domain
PROSITE profilePS5103216.186154211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16154211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
AAAAAKEEKR KEDGFGIGFV LFWAFHASAP FAFHSNVHLI KLILLPSFLP SVFLSLLPSP  60
LLLSSPLTLL TLSPHSFAQC RDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GMEADINFSL  120
EDYDDIKQMG NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY  180
LGLFDTEEEA ARSYDRAAIK CNGKDAVTNF DPSTYAEEFE PTASAGDAEQ NLDLSLGSSA  240
GSNKRGSLDG GDDDGAAGPD QRVPMAFELD WQTAAARSTK AKFDQSFTHH QMPPPLLQAS  300
HMPFSPRHHQ FMGNGDPGTA GGPSLTVGAG GGGGHWPLPP HHQYQPPPPP QQQQQQQQRL  360
HGWGNVVPGT SWQPPQPPPH HQAGPPPNNA AAAAAAAAAS SRFPPYIATQ AQSWLQKNGF  420
HSLARPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601490.0AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04.
GenBankAK3719530.0AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161606.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AVJ91e-148APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A446MTS70.0A0A446MTS7_TRITD; Uncharacterized protein
TrEMBLM5A9S10.0M5A9S1_9POAL; TaAP2-B
TrEMBLM5A9V30.0M5A9V3_TRITU; TaAP2-B
TrEMBLM5A9W00.0M5A9W0_9POAL; TaAP2-B
TrEMBLM5A9Z80.0M5A9Z8_9POAL; TaAP2-B
TrEMBLM5AAW80.0M5AAW8_WHEAT; TaAP2-B
TrEMBLM5AB390.0M5AB39_TRITD; TaAP2-B
TrEMBLM5AX290.0M5AX29_9POAL; TaAP2-B
STRINGTraes_2BL_FE46FC938.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-81AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]