PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_F442E87DD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 343aa    MW: 37042.2 Da    PI: 5.4407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_F442E87DD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-11141185655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Traes_2BL_F442E87DD.1 141 IVSERKRRFRMKEKLYELRALVPNI-----TKMDKASIIADAVAYVKNLQ 185
                            568*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-13132185No hitNo description
SuperFamilySSF474592.88E-16132202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010039Biological Processresponse to iron ion
GO:0034756Biological Processregulation of iron ion transport
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEHHQRLLHL SPHQEHLMIG PGFFDVDPMH FHGDDGGFAV QPAAAVVDDG AWMEDLMHLG  60
DELFGGGGGG GGAGDDNDMV GAAADQAWRQ ECEGASPDDH PCSYDDVISP VSGEQGAGFE  120
PSRDDSDLSG TRKRRDRSKT IVSERKRRFR MKEKLYELRA LVPNITKMDK ASIIADAVAY  180
VKNLQSHARK LKEDVATLEA RPGLAGRRQQ QQQQQKQGRR QGQHGRNGGD DEGNSGSSRG  240
GGGARVTLVS AAQVGEGRFF VTVECERRDG VAAPLCAAVE SLAGFLVESS NLGCSSDRVV  300
STLTLKVSEA REEVMISDRT VKLWVMAALL SEGFRPEATS EIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132147KRRDRSKTIVSERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239803.21e-126PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLW5BHA50.0W5BHA5_WHEAT; Uncharacterized protein
STRINGMLOC_6707.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-37FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]