PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_E82F7902D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 444aa    MW: 46880.1 Da    PI: 7.5597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_E82F7902D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.4e-053273641254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Traes_2BL_E82F7902D.1 327 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 364
                            677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.227315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-10325383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-7325373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-5325367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGDHQLMYSA PAMHNGGGGG GAVSHGMWWN TNTTAVPAAA CSTELAGFNT WPAAQLAAGG  60
GYDMAATDGG KAKSCTTTAS SESPGNNSSV TFQETASISD PAAGFTDWNS PYMSNGGAGN  120
MHGFLQVGHH DMSSRTDQQS HMNASSLMND PSPNNLDLAL QGHHHHQHQQ AGDHHRQQQL  180
LSSLGAPELL LSPNSPYGFQ SSSLLRSLLE PTAKPAPAAG IQQYQYQQMG GQAGVREPLQ  240
FTNDAAFWNP SAGFGMAMPA PAAAEQTSVR SVKRSSPAPR GANLALKSVL EGVGDSSSIV  300
TKKANSEPAF KKPRTETPSS LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHETIEY  360
IKFLHDQAGV LSAPYLKRGH HQHQVPQYLN LKSSSASPDK SCKDGSGEVS LKGRGLCLVP  420
ISSTFAVASD GPVDFWTPFG GQFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695050.0AK369505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092J07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190605.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A3B6CDV60.0A0A3B6CDV6_WHEAT; Uncharacterized protein
TrEMBLA0A446MRH80.0A0A446MRH8_TRITD; Uncharacterized protein
STRINGTraes_2BL_E82F7902D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.19e-46bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]