PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_A89BDB407.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 1127aa    MW: 125120 Da    PI: 5.4382
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_A89BDB407.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.36.9e-541192343117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e k+rwlk++e++ iL n+e+ ++t+e++++p+sg+l+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg++++l+cyYah+e
  Traes_2BL_A89BDB407.2 119 REaKSRWLKPSEVYYILLNHEQLQITHEPPNKPPSGALFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNIDALSCYYAHGE 206
                            4559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            +np fqrrc+w+Le ++++ivlv+y+ev
  Traes_2BL_A89BDB407.2 207 QNPYFQRRCFWMLEPAYDHIVLVQYREV 234
                            **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.685114240IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-69117235IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-46120233IPR005559CG-1 DNA-binding domain
CDDcd001020.00857553637No hitNo description
SuperFamilySSF812961.02E-15554636IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.106.9E-7554644IPR013783Immunoglobulin-like fold
PfamPF018331.9E-7554635IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.6E-15746840IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-15747842IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.777748840IPR020683Ankyrin repeat-containing domain
CDDcd002042.41E-9753840No hitNo description
PfamPF127961.9E-6763841IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.167781813IPR002110Ankyrin repeat
SMARTSM002489.9E-5781810IPR002110Ankyrin repeat
SMARTSM0001533901923IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218902931IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.23E-79481007IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.352961989IPR000048IQ motif, EF-hand binding site
SMARTSM000156.9961981IPR000048IQ motif, EF-hand binding site
PfamPF006120.003962980IPR000048IQ motif, EF-hand binding site
SMARTSM000158.8E-69821004IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.429831011IPR000048IQ motif, EF-hand binding site
PfamPF006123.6E-59841004IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
RVSFSALILE SRNGRKEPSR SPLHLGSQQL LFPSCVPAVA LFWERTLGAI LPPHPSPSTS  60
SISAFTHLLP YCFSSCLFGV GASISWSSRP TPSFHESFEA AGSPQVTMSQ SFDINVLLRE  120
AKSRWLKPSE VYYILLNHEQ LQITHEPPNK PPSGALFLYN RRVNRFFRKD GYAWRRKKDG  180
RTVGEAHERL KVGNIDALSC YYAHGEQNPY FQRRCFWMLE PAYDHIVLVQ YREVAEGRYY  240
STLSNGSAGS LSTLSYPNDI HGKHGSTSDF SEGNESHQSS VTEVSSYSAN KEENHDSGVL  300
LSIPELQQST VMGIPELDQS SLERSSEFCM VNNNDSTNTS GLNQALKSIA EQLSLGDDDY  360
IYINQARSLD FTTNTEAADV QGNQTSNSLG DDEANQIRPE GAHGVGRGIS SSWENVLQSD  420
LGLPASSTYQ FGAHYQQSSE YQPPGGLDSS NLQLQISAAK RFLLGSEDPI DSPSYIPRDE  480
GINGINTLSA HDSSLESCLN PDWHRTTPVT LQSSLYQSNS CGYEISEFFD NGQFEPSSEE  540
DTRLTVKQKQ QFSIREISPE WAFCYEVTKV IITGDFLCDP SNICWAVMFG DTEVPVEIVQ  600
PGVLRCHTPL HSAGKLTLCI TTGNRKVCSE IKDFEFRAKS TASSFIDFAP SSMKSTEELS  660
LLAKFARILL CDNGSSAASG DDPQPGQSPK LKMNEDNWQR LINELDVGCE NPLSRVDWIM  720
EELLKSKLQQ WLSLRLQGDD GTCSLSKNEQ GIIHLISALG YDWALSSVLS AGVGINLRDS  780
NGWTALHWAA YYGREKMVAA LLAAGASAPA VTDPTAQDPV GKSAAFLASE QGHVGLAGYL  840
SEVALTSYLA SLTIEESGIS DGLAAIEAER AVESISQRSA QLHGGTEDEL SLKDSLAAVR  900
NAAQAAARIQ NAFRAFSFRR RQHKDARLKD EYGMTQEDID ELAAASRLYY QHHVSNGQFC  960
DKAAVSIQKK YRGWKGRKNF LHMRRNVVKI QAHVRGHQVR KKYKTFVSTV SVLEKVILRW  1020
RRKGHGLRGF RAEQSVMIEA EEGEEEDDDD FDDDEAVKIF RRQKVDESVK ESVSRVLSMV  1080
DSPEARMQYR RMLEEFRQAT AELGASDKAT SSILDNDLLV EIDKFTC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239810.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X2
TrEMBLW5BDP60.0W5BDP6_WHEAT; Uncharacterized protein
STRINGMLOC_58709.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-135signal responsive 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]