PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_A014BCC51.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 444aa    MW: 46956.4 Da    PI: 7.1904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_A014BCC51.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.4e-053293661254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Traes_2BL_A014BCC51.2 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366
                            677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.017317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-8327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11327385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-5327370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGDHQLMHAA PAMYNGSGAG AVSHGMWWNS NAAAAVPSAA CSTELAGFNT WPAGLAAGGY  60
DVAADGGKQA KSCTTTASSE SPGNNSSLTF QETASINDPA AAGFADWNNP YIHMMIIDPH  120
KSSGAGNMHG FLQVGHHDMS SRTDQQSMMN AVAAPNNLDL ALQGHHHHQQ QQDDHHRQQQ  180
LLSSLGAPEL LLSPNSPYGF QSSLLRSLIE PTGKPAPAAG LLQQYQYQQM GGQTGARGEP  240
LQFTNDAAFW NQSAGFGMGM AAPPATDNTS VRAAKQPSPA PRGANLALKT VLEGVGDSSS  300
IVAKKAGGEP AFKKPRMETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GVLSAPYLKS GHHQHQVPQY LKSSSNGSPD KSCKDGGEVS LKGRGLCLVP  420
ISSTFAVASD VPVDFWNPFG PQFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643030.0AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168093.10.0transcription factor bHLH112-like
TrEMBLA0A446MVH00.0A0A446MVH0_TRITD; Uncharacterized protein
STRINGTraes_2BL_A014BCC51.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-45bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]