PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_8BDCCE9F8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 480aa    MW: 51767.9 Da    PI: 6.3918
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_8BDCCE9F8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.1e-11137193155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Traes_2BL_8BDCCE9F8.1 137 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 193
                            57*******************5444.2455536655.779999**************98 PP

2AP248.22.8e-15236287155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Traes_2BL_8BDCCE9F8.1 236 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 287
                            57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.01E-18137203No hitNo description
SuperFamilySSF541711.44E-14137202IPR016177DNA-binding domain
PfamPF008476.3E-9137193IPR001471AP2/ERF domain
SMARTSM003801.1E-22138207IPR001471AP2/ERF domain
PROSITE profilePS5103217.504138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-12138202IPR001471AP2/ERF domain
PRINTSPR003677.5E-6139150IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17236296IPR016177DNA-binding domain
CDDcd000183.27E-23236296No hitNo description
PfamPF008476.0E-10236287IPR001471AP2/ERF domain
SMARTSM003803.7E-33237301IPR001471AP2/ERF domain
PROSITE profilePS5103219.256237295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18237295IPR001471AP2/ERF domain
PRINTSPR003677.5E-6277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDMDAAHGHY PWLNFSLAHH CEMGEEERGA AAELAAIAGA GPPPKLEDFL GGGANGNHNG  60
RNNNDAGRGD QVVSAATAEM YDSELKFLAA GFLGGATGTT APTISPAAAP QEQADPKMPA  120
PAPEQKKAVD SFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QGGYDKEEKA  180
ARAYDLAALK YWGSSTTTNF PVADYEKEVE EMKHMTRQEF VASLRRKSSG FSRGASIYRG  240
VTRHHQHGRW QARIGRVAGN KDLYLGTFST EEEAAEAYDI AAIKFRGLSA VTNFEIGRYN  300
VESIISSNLP IGNMSGGAGR GSKALESSSP EAAALPVEAP HSLAFTALPM KYDQQQQDYL  360
SFLALQHHQQ GNLQGLGYGL YSSGVNLDFA NAGPGGAMAP HCYGSNAGDL HLQQHDQQQQ  420
QHEGEGQEQQ HDQHHSMGFG ASTPMAAFSS GGPYESSVTA GSFGYYPNVA AFQTPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653650.0AK365365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033L15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186522.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A446MT420.0A0A446MT42_TRITD; Uncharacterized protein
STRINGTraes_2BL_8BDCCE9F8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]