PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_569371098.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 433aa    MW: 46574.9 Da    PI: 9.6259
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_569371098.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.2e-1394154155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++gr++A+++d  ++  g   k  + +  g ++ +e+Aa+a+++a++k++g
  Traes_2BL_569371098.2  94 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtrKGrQVHFTGGYDMEEKAARAYDQAALKYWG 154
                            78*******************98888666863355555688******************98 PP

2AP252.41.4e-16199248355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  Traes_2BL_569371098.2 199 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 248
                            9***************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-1594162No hitNo description
PfamPF008477.2E-1094154IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1494163IPR016177DNA-binding domain
PROSITE profilePS5103216.59595162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-1495163IPR001471AP2/ERF domain
SMARTSM003802.7E-2395168IPR001471AP2/ERF domain
PRINTSPR003672.4E-696107IPR001471AP2/ERF domain
CDDcd000182.16E-22197258No hitNo description
SuperFamilySSF541719.81E-18197257IPR016177DNA-binding domain
PROSITE profilePS5103218.979198256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-18198256IPR001471AP2/ERF domain
SMARTSM003801.1E-32198262IPR001471AP2/ERF domain
PfamPF008472.9E-11199248IPR001471AP2/ERF domain
PRINTSPR003672.4E-6238258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MANWVQVARG ATAYATAENV LSAAADRQQH LHHHPLALSM SSAGSLSSCV TAGAEYGGVV  60
ATVDGGRKRG GATAGQKQPV HHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  120
GQTRKGRQVH FTGGYDMEEK AARAYDQAAL KYWGPSTHIN FPLEDYQQEL EEMKNMTRQE  180
YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVSG NKDLYLGTFG TQEEAAEAYD  240
IAAIKFRGLN AVTNFDITRY DVDKIMASNT LLPGELARRN KDANAAPLPL PAPDDCAASA  300
LVPVSTPGTD TGGSGQHRHH DVMSSGEAFS ALHDLVTVDG HTAQGGNGAH VHMSMSGASS  360
LVTSLSNSRE GSPDRGGGLS MLFAKPPQQP ATTTAASPKL MSTLAPLGSW ASSARPAAVS  420
IAHMPMFAAW SDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-178BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155443.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A446M9E30.0A0A446M9E3_TRITD; Uncharacterized protein
STRINGTraes_2BL_569371098.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]