PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_439C794F5.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 409aa    MW: 43700.7 Da    PI: 6.4453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_439C794F5.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.41.6e-29105193185
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +
  Traes_2BL_439C794F5.3 105 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRGGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCR 192
                            89***************************955556888************************************************85 PP

                            - CS
                     B3  85 d 85 
                             
  Traes_2BL_439C794F5.3 193 G 193
                            4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-4197212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-29101208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-25103190No hitNo description
PROSITE profilePS5086313.733105210IPR003340B3 DNA binding domain
PfamPF023621.2E-26105208IPR003340B3 DNA binding domain
SMARTSM010192.7E-21105210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEFTAASSSS RLSKEGEEEE EMEEEEEEGD EASPREIPFM TAMTAAASSS SPTSAASPSS  60
AAASACASGS GSPFRSSDGA GASGSGAGGG AGGGDVEVID KEHMFDKVVT PSDVGKLNRL  120
VIPKQHAEKY FPLDAAANEK GLLLSFEDRG GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK  180
RLDAGDTVSF CRGAAEATRD RLFIDWKRRA ELRDPHRLAR LPMPMPTSSP YGPWGAGPGG  240
FFMPPAPPAT LYEHHRLRQS FDFRSISPAA PQRPQVLYFG SAGIFPHATM PPPQPQPPLH  300
IAVQPSPAVT VGMPMVLDST PLVNSPTAAA KRVRLFGVNL DNPHTHGGES SNDANALSLR  360
MPGWQRPTPF RSLELPQHGA AGAESSAASS PSSSSSSKRE AHSSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-601002093113B3 domain-containing transcription factor NGA1
5os9_B1e-601002093113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745460.0AK374546.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174582.10.0B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-132Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A3B6CAP40.0A0A3B6CAP4_WHEAT; Uncharacterized protein
TrEMBLA0A446MK520.0A0A446MK52_TRITD; Uncharacterized protein
STRINGTraes_2BL_439C794F5.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-64B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]