PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_36A3AB3A2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 551aa    MW: 59217.6 Da    PI: 10.5416
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_36A3AB3A2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-391863243131
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...eaesssssa 82 
                            g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++     ++ +as++   +++ss   a
  Traes_2BL_36A3AB3A2.1 186 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELdaaafPNHPASASasaNKQSSALHA 273
                            78*************************************************************8888833333333323333333333 PP

                    TCP  83 s.nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmr 131
                            +  +s++++ + + +s+ s++s+ s+l+l++ +sr kar+rar+r+++ + 
  Traes_2BL_36A3AB3A2.1 274 EaDDSQPQQLTRSGCSSTSETSKGSVLSLSRsDSRVKARERARDRSASVKD 324
                            31344448888888******************************9887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-40186322IPR005333Transcription factor, TCP
PROSITE profilePS5136932.112187245IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.504305325IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
NGTPLPPRSA HLPPPPLPLS LSLGLIKSGD LFLPPSIVSS RLVLLTLHLP SLPLPPSLAA  60
PCSLHSIPSP QGAHGIARRS APPIPRARFP LPASPRRPGW LNFATNALWV GHERHWRRLA  120
GGPIHTRMEL SVAAAAVELG KRGRPDDQYQ EQDQDHGDAK RLALVPWPPH QQHPSSRIYR  180
VSRGSGGKDR HSKVYTAKGI RDRRVRLSVA TAIQFYDLQD RLGYDQPSKA VEWLIKAAAA  240
AIDKLPELDA AAFPNHPASA SASANKQSSA LHAEADDSQP QQLTRSGCSS TSETSKGSVL  300
SLSRSDSRVK ARERARDRSA SVKDKDDSVT AAVHRRPPSA QAASFTELLT GLAAATPAVA  360
QHKQHNSWQQ MTASATADYL GFAQPRKSGH GMLHTFASPA PHLGNIAPVS MAPAQHFSLS  420
AGGGDSQTEM PHFSFSQDHY MPVHAAPASG PAVDYSLNFS MSSGLVGVNN TRGTLQSNSQ  480
PHLSGHHHHH HHHQQLQRLS TPLDAPHIPF LFSPAVAVAS PTTAESHFGA AAALQLWEGF  540
RHSDMKEKGK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-26192246155Putative transcription factor PCF6
5zkt_B3e-26192246155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703480.0AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165443.10.0transcription factor PCF6-like
TrEMBLA0A3B6AYU10.0A0A3B6AYU1_WHEAT; Uncharacterized protein
TrEMBLA0A446KZ320.0A0A446KZ32_TRITD; Uncharacterized protein
STRINGTraes_2BL_36A3AB3A2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]